GeneModels:	refseq_zebrafish_genes_refflat
Alleles:	putativesnps.txt

Results are printed for each intersecting gene and include:
1) The UCSC gene model (Name(s),Chrom,GeneStart,GeneStop,Strand,TSS)
	2) The intersecting Alleles (Start,End,Allele,Notes)
		3) Their relative location and potential effects.

arhgef11	NM_001031840	chr7	6227372	6331022	-	6331022	
	6245036	6245037	T	Coverage:A:C:G:T = 2:0:0:0:2
		Coding exon 34
			Non-synonymous R > Q
	6270684	6270685	T	Coverage:A:C:G:T = 9:0:0:0:9
		Coding exon 22
			Non-synonymous S > Y
esrp2	NM_199272	chr7	36249508	36276516	+	36249508	
	36261550	36261551	C	Coverage:A:C:G:T = 10:0:10:0:0
		Coding exon 8 splice site
			Synonymous
	36261563	36261564	T	Coverage:A:C:G:T = 15:0:0:1:14
		Coding exon 8
			Non-synonymous A > S
zgc:153386	NM_001077332	chr7	36418434	36420332	+	36418434	
	36418566	36418567	T	Coverage:A:C:G:T = 3:0:0:0:3
		Coding exon 1
			Non-synonymous T > I
atp6v0d1	NM_199620	chr7	36541075	36549613	+	36541075	
	36545792	36545793	T	Coverage:A:C:G:T = 13:1:0:0:12
		Coding exon 5
			Non-synonymous T > S
brd7	NM_213366	chr7	39134397	39147440	+	39134397	
	39136092	39136093	A	Coverage:A:C:G:T = 238:194:0:0:44
		Coding exon 2
			Non-synonymous D > E
gpatch1	NM_001204123	chr7	39657464	39669342	+	39657464	
	39659687	39659688	C	Coverage:A:C:G:T = 13:0:12:1:0
		Coding exon 7
			Non-synonymous E > Q
ccdc123	NM_200878	chr7	39787314	39867900	+	39787314	
	39800011	39800012	T	Coverage:A:C:G:T = 4:0:0:0:4
		Coding exon 8
			Non-synonymous R > S
f2	NM_213390	chr7	40143022	40151853	+	40143022	
	40151248	40151249	G	Coverage:A:C:G:T = 23:2:0:21:0
		Coding exon 12
			Non-synonymous T > A
tada2b	NM_001024443	chr7	41131230	41134458	+	41131230	
	41133618	41133619	T	Coverage:A:C:G:T = 2:0:0:0:2
		Coding exon 2
			Non-synonymous T > I
	41133882	41133883	C	Coverage:A:C:G:T = 13:0:12:0:1
		Coding exon 2
			Non-synonymous V > A
	41133946	41133947	A	Coverage:A:C:G:T = 4:4:0:0:0
		Coding exon 2
			Non-synonymous D > E
shrprbck1r	NM_001111200	chr7	41452718	41474779	-	41474779	
	41474538	41474539	T	Coverage:A:C:G:T = 7:0:0:0:7
		Coding exon 1
			Non-synonymous R > Q
ncapg2	NM_001089492	chr7	41598135	41619812	+	41598135	
	41605866	41605867	G	Coverage:A:C:G:T = 8:0:0:8:0
		Coding exon 12
			Non-synonymous I > M
	41611776	41611777	T	Coverage:A:C:G:T = 4:0:0:0:4
		Coding exon 19
			Non-synonymous S > F
	41617083	41617084	C	Coverage:A:C:G:T = 2:0:2:0:0
		Coding exon 23
			Non-synonymous S > T
shcbp1	NM_199843	chr7	42231101	42254717	-	42254717	
	42253863	42253864	G	Coverage:A:C:G:T = 2:0:0:2:0
		Coding exon 2
			Non-synonymous D > H
	42254481	42254482	C	Coverage:A:C:G:T = 18:0:14:0:4
		Coding exon 1
			Non-synonymous N > D
	42254514	42254515	A	Coverage:A:C:G:T = 60:55:0:0:5
		Coding exon 1
			Non-synonymous I > F
dync1li2	NM_001017669	chr7	45665795	45692822	-	45692822	
	45673047	45673048	C	Coverage:A:C:G:T = 13:2:11:0:0
		Coding exon 8
			Non-synonymous C > G
per1b	NM_212439	chr7	52277644	52301471	+	52277644	
	52299321	52299322	A	Coverage:A:C:G:T = 32:32:0:0:0
		Coding exon 19
			Non-synonymous A > T
slc38a7	NM_001003648	chr7	53260807	53269947	+	53260807	
	53263498	53263499	A	Coverage:A:C:G:T = 5:5:0:0:0
		Coding exon 3
			Non-synonymous S > T
znf609	NM_001030081	chr7	55790768	55825914	-	55825914	
	55794415	55794416	A	Coverage:A:C:G:T = 17:17:0:0:0
		Coding exon 4 splice site
			Synonymous
	55796477	55796478	A	Coverage:A:C:G:T = 5:5:0:0:0
		Coding exon 3
			Non-synonymous M > L
LOC565422	NM_001128726	chr7	57940279	57943717	+	57940279	
	57943641	57943642	A	Coverage:A:C:G:T = 3:3:0:0:0
		Coding exon 2
			Non-synonymous V > E
pc	NM_131550	chr7	60934338	61306673	-	61306673	
	60975680	60975681	C	Coverage:A:C:G:T = 49:0:49:0:0
		Coding exon 18
			Non-synonymous L > R
	61281326	61281327	A	Coverage:A:C:G:T = 75:68:0:7:0
		Coding exon 5
			Non-synonymous R > C
zgc:103545	NM_001005985	chr7	61753053	61760071	-	61760071	
	61757406	61757407	C	Coverage:A:C:G:T = 20:0:18:2:0
		Coding exon 3
			Non-synonymous S > C
ostc	NM_200269	chr7	65684968	65692168	+	65684968	
	65684989	65684990	C	Coverage:A:C:G:T = 114:0:114:0:0
		Coding exon 1
			Non-synonymous I > L
fam60al	NM_198825	chr7	66822194	66830200	-	66830200	
	66822343	66822344	T	Coverage:A:C:G:T = 35:0:0:0:35
		Coding exon 6
			Non-synonymous F > Y
cyb5b	NM_212876	chr7	69787762	69798598	+	69787762	
	69797346	69797347	C	Coverage:A:C:G:T = 3:0:3:0:0
		Coding exon 5
			Non-synonymous S > T
